graphical abstract

FlaME User's Guide

• button [Moving] Moving Tool
• button [Selection] Selection Tool
• button [M1] Atom-atom Mapping Tool
• button [New] clear Workspace
• button [Delete mode] 1. toggle on | off the Delete mode
2. [Selection mode]: delete selected molecule(s)
• button [Undo] 1. call previous saved undo/redo Molfile
2. + [SHIFT] Key: call the first saved undo/redo Molfile
• button [Redo] 1. call next saved undo/redo Molfile
2. + [SHIFT] Key: call the last saved undo/redo Molfile
• button [Copy] 1. copy the Molfile or Reaction file to the System Clipboard
2. [Reaction mode]: copy selected molecule(s)
• button [Remove explizit hydrogens] remove all explizit hydrogens(Tip: to undo/redo this action use UNDO/REDO buttons)
• button [Actualise and center] actualise and center the current structure
• button [Reaction arrow] toggle on | off the reaction mode
• button [New molecule] switch on New molecule mode (will be switched off after the new molecule has been started)
• button [Grid] switch on | off the Grid
UNDO | REDO Tool
• button [UNDO], press call previous saved Molfile (up to 10)
• button [REDO], press call next saved undo/redo Molfile (up to 10)
• button [UNDO], press + [SHIFT] Key call the first saved undo/redo Molfile
• button [REDO], press + [SHIFT] Key call the last saved undo/redo Molfile
button [Reaction arrow] and the Reaction arrow symbol
• button [Reaction arrow], press 1. toggle on | off the reaction mode
2. the Reaction arrow itself will be placed in the center of workspace
• button [Reaction arrow], press + [SHIFT] Key the Reaction arrow will be placed in the previously saved position
• symbol [Reaction arrow], press + [SHIFT] Key change the Reaction arrow type (not supported by MDL Molfile format)
• symbol [Reaction arrow], press + [CONTROL] Key change the width of the Reaction arrow (useful if reagents structures will be drawn, over or under the Reaction arrow)
Moving Tool
• press on atom or bond and move mouse select the molecule and move it
Selection Tool
• press on atom select the molecule
• press on atom, in Reaction Mode, button [Reaction arrow] is on, press [Copy] button select the molecule(s), copy the molecule(s) in Reaction mode
• press on atom, in Reaction Mode, button [Reaction arrow] is on, press [Delete] button select the molecule(s), delete the molecule(s) in Reaction mode
Atom-atom Mapping Tool
• button [M1], press toggle on | off atom-atom mapping mode
• button [M1], press + [SHIFT] Key clear all atom-atom mapping numbers
• click on atom without number set the next atom-atom mapping number
• click on atom with number increase the atom-atom mapping number by 1
• click on atom with number + [SHIFT] Key decrease the atom-atom mapping number by 1
• click on atom with number + [CONTROL] Key clear the atom-atom mapping number
Context menu (to open with the right mouse click)
• Project website open the FlaME Project website
• J.of Cheminformatics Open Access article FlaME: Flash Molecular Editor - a 2D structure input tool for the web
• User's Guide open this FlaME User's Guide